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Short time-series expression miner analysis

Splet24. jun. 2011 · The significance of co-expression was then assessed by applying the clustering algorithm implemented in the short time-series expression miner STEM (version 1.3.6) [28,29] for co-expression profiling and a subsequent comparison of the number of genes assigned to a specific co-expression profile model to the expected number of … Splet05. apr. 2006 · Results: We introduce the Short Time-series Expression Miner (STEM) the first software program specifically designed for the analysis of short time series …

STEM: Short Time-series Expression Miner - Carnegie Mellon …

SpletBelow are some of the papers using the Short Time-series Expression Miner (STEM)software or method as part of the data analysis: M. Chamankhah, E. Eftekharpour, S. Karimi-Abdolrezaee, P.C. Boutros, S. San-Marina, M.G. Fehlings. Genome-wide gene expression profiling of stress response in a spinal cord clip compression injury model. SpletShort Time-Series Expression Miner (STEM) Analysis. We performed STEM analysis 32 of the GSE54514 dataset in order to cluster gene modules in healthy controls, sepsis … t107a https://marchowelldesign.com

Short Time-Series Expression Miner (STEM) analysis of DEG …

SpletShort Time-Series Expression Miner (STEM) Analysis. We performed STEM analysis 32 of the GSE54514 dataset in order to cluster gene modules in healthy controls, sepsis survivors and sepsis patients who died. Clustering was significant if it was associated with P < 0.05. SpletFor the first time, transcriptome analysis based on short time-series expression miner (STEM) and histological observations were performed using the Holstein dairy cow mammary gland to explore gene expression patterns in this process of decrease (at peak, mid-, and late lactation). Splet23. okt. 2024 · STEM（Short Time-series Expression Miner）是一款专门针对梯度排序的表达量数据进行趋势分析的软件。 STEM趋势分析的意义 趋势分析将表达模式相似的基因 … t1087 - account discovery

Transcriptome Analysis of Landrace Pig Subcutaneous ... - PubMed

Category:Short Time-series Expression Miner (STEM) analysis of the …

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Short time-series expression miner analysis

Gene clustering by short time series expression miner analysis.

Splet05. apr. 2006 · A platform for Processing Expression of Short Time Series (PESTS), designed with a focus on usability and interpretability of analyses for the researcher, … Splet22. okt. 2024 · By short time-series expression miner (STEM) analysis, Gene Ontology analysis, and lncRNA-mRNA co-expression network analyses, we identified some key molecules specifically related to...

Short time-series expression miner analysis

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Splet19. sep. 2024 · Short time-series expression miner (STEM) analysis is a well-validated and widely used bioinformatics approach that identifies statistically significant time … Splet Short Time-Series Expression Miner (STEM) analysis of gene expression profile. Squares of the same color indicate that the correlation is &gt;0.7. (A) Trend analysis of genes. Gene...

Splet20. jun. 2024 · For the first time, transcriptome analysis based on short time-series expression miner (STEM) and histological observations were performed using the … SpletOverview of the TSMiner workflow. TSMiner accepts time-series expression profiles, TF–TG interaction data and pathway gene sets. The time-series gene expression matrix is first repeatedly divided to generate a tree-structure model comprising multiple bifurcation patterns, followed by identification of activated or repressed TFs with targets that are …

SpletSTEM: a tool for the analysis of short time series gene expression data. BMC Bioinformatics, 7:191, 2006. Posted on 2012/08/21 Author admin Categories Microarray … Splet07. nov. 2024 · To reveal the genetic mechanism of rejuvenation, we detected blood hormone indexes and gene expression levels in the hypothalamus and ovary of hens from five different periods during FM. Three hormones were identified as participating in FM.

Splet05. apr. 2006 · In this paper we introduce the Short Time-series Expression Miner (STEM), the first software application designed specifically for the analysis of short time series …

SpletGene clustering by short time series expression miner analysis. Each line in the figure represents an expression value of the corresponding gene. The abscissa represents the grade of glioma,... t10f150455Splet17. jun. 2024 · Short time-series expression miner (STEM) analysis The STEM analysis of the total DEGs of four important temporal gene expression profiles (81_Y, 20_Y, 81_H and 20_H) was performed using the STEM version 1.3.11 … t108 2b health nut basketSpletShort Time-Series Expression Miner (STEM) analysis of DEG expression profiles. (A) Each box corresponds to a type expression profile and only colored profiles are statistically... t10f150452Splet15. mar. 2024 · Transcriptome sequencing was performed on fibrotic joint capsule samples in four groups followed by bioinformatics analyses including differentially expressed … t1098 form nsuhttp://www.sb.cs.cmu.edu/stem/ t10al fuseSplet12. apr. 2024 · STEM (Short Time-series Expression Miner) analysis indicated significant variations in the mRNA expression across distinct muscle development stages. The differential expression of 12 selected DEGs was confirmed by RT-qPCR. The results of this study contribute to our understanding of the molecular mechanism of IMF deposition and … t1080ti stock cooler overclockingSpletThe Short Time-series Expression Miner (STEM) is a Java program for clustering, comparing, and visualizing short time series gene expression data from microarray experiments (~8 time points or fewer). ... STEM: a tool for the analysis of short time series gene expression data. BMC Bioinformatics, 7:191, 2006. t10b40x2 neff